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whole genome sequencing data  (Genomics England)

 
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    Structured Review

    Genomics England whole genome sequencing data
    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; <t>WGII,</t> <t>whole-genome</t> instability index;ll *, P < 0.05.
    Whole Genome Sequencing Data, supplied by Genomics England, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+genome+sequencing+data/genome+sequencing+whole/pmc13136883-3-2-11
    Average 86 stars, based on 1 article reviews
    whole genome sequencing data - by Bioz Stars, 2026-10
    86/100 stars

    Images

    1) Product Images from "Contrasting Features of Papillary and Chromophobe Renal Cell Carcinoma Revealed by Whole-Genome Sequencing"

    Article Title: Contrasting Features of Papillary and Chromophobe Renal Cell Carcinoma Revealed by Whole-Genome Sequencing

    Journal: Molecular Cancer Research

    doi: 10.1158/1541-7786.MCR-25-0616

    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.
    Figure Legend Snippet: Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Techniques Used: Sampling, Variant Assay

    Related Articles

    Sequencing:

    Article Title: A scoping review of human genetic resources management policies and databases in high- and middle-low-income countries
    Article Snippet: .. Genomics England, through its 100,000 Genomes Project [ ], offers whole genome sequencing data from individuals with rare diseases and cancer, with access governed by NHS approvals. ..

    Article Title: Functional variants in the cystic fibrosis transmembrane conductance regulator (CFTR) gene are associated with increased risk of colorectal cancer.
    Article Snippet: Background.. Individuals with cystic fibrosis (CF; a recessive disorder) have an increased risk of colorectal cancer (CRC).. Evidence suggests individuals with a single CFTR variant may also have increased CRC risk.

    Article Title: Mechanistic basis of atypical TERT promoter mutations.
    Article Snippet: .. Processing of Genomics England data for TERTp mutation analysis Whole genome sequencing data fromGenomics Englandwas accessed through the Genomics England Research Environment. .. Patients clinically diagnosedwithmalignantmelanoma (345primary tumours) were initially selected using Genomics England LabKey database.

    Article Title: Contrasting Features of Papillary and Chromophobe Renal Cell Carcinoma Revealed by Whole-Genome Sequencing
    Article Snippet: .. We analyzed whole-genome sequencing data on 164 tumor–normal pairs from the Genomics England 100,000 Genomes Project, providing a comprehensive, high-resolution map of copy number alterations, structural variation, and key global genomic features, including mutational signatures, intratumor heterogeneity, and analysis of extrachromosomal DNA formation. ..

    Article Title: A scoping review of human genetic resources management policies and databases in high- and middle-low-income countries.
    Article Snippet: .. Genomics England, through its 100,000 Genomes Project [52], offers whole genome sequencing data from individuals with rare diseases and cancer, with access governed by NHS approvals. ..

    Article Title: Mechanistic basis of atypical TERT promoter mutations
    Article Snippet: .. Whole genome sequencing data from Genomics England was accessed through the Genomics England Research Environment. .. Patients clinically diagnosed with malignant melanoma (345 primary tumours) were initially selected using Genomics England LabKey database.

    Article Title: Complex rearrangements fuel ER + and HER2 + breast tumours
    Article Snippet: .. Further, we processed 406 ductal carcinoma in situ lesions profiled with shallow whole genome sequencing (HTAN; median coverage = 5 reads);leveraged 1,894 primary tumors (METABRIC) with array-based genomic and transcriptomic profiles along with 20 years of clinical follow-up; and 3042 tumors from Genomics England (GEL) (v18) with whole genome sequencing data, which were processed within the Genomics England Research Environment26. ..

    Article Title: The relationship between the gastric cancer microbiome and clinicopathological factors: a metagenomic investigation from the 100,000 genomes project and The Cancer Genome Atlas
    Article Snippet: .. Whole genome sequencing data of fresh frozen primary gastric adenocarcinoma and matched blood samples, plus clinical metadata from the 100,000 Genomes Project were accessed within the Genomics England Research Environment [ ]. .. All analyses of Genomics England data were performed within the Genomics England Research Environment.

    Comparison:

    Article Title: Functional variants in the cystic fibrosis transmembrane conductance regulator (CFTR) gene are associated with increased risk of colorectal cancer.
    Article Snippet: Background.. Individuals with cystic fibrosis (CF; a recessive disorder) have an increased risk of colorectal cancer (CRC).. Evidence suggests individuals with a single CFTR variant may also have increased CRC risk.

    Mutagenesis:

    Article Title: Mechanistic basis of atypical TERT promoter mutations.
    Article Snippet: .. Processing of Genomics England data for TERTp mutation analysis Whole genome sequencing data fromGenomics Englandwas accessed through the Genomics England Research Environment. .. Patients clinically diagnosedwithmalignantmelanoma (345primary tumours) were initially selected using Genomics England LabKey database.

    In Situ:

    Article Title: Complex rearrangements fuel ER + and HER2 + breast tumours
    Article Snippet: .. Further, we processed 406 ductal carcinoma in situ lesions profiled with shallow whole genome sequencing (HTAN; median coverage = 5 reads);leveraged 1,894 primary tumors (METABRIC) with array-based genomic and transcriptomic profiles along with 20 years of clinical follow-up; and 3042 tumors from Genomics England (GEL) (v18) with whole genome sequencing data, which were processed within the Genomics England Research Environment26. ..



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    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; <t>WGII,</t> <t>whole-genome</t> instability index;ll *, P < 0.05.
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    Image Search Results


    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Journal: Molecular Cancer Research

    Article Title: Contrasting Features of Papillary and Chromophobe Renal Cell Carcinoma Revealed by Whole-Genome Sequencing

    doi: 10.1158/1541-7786.MCR-25-0616

    Figure Lengend Snippet: Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Article Snippet: We analyzed whole-genome sequencing data on 164 tumor–normal pairs from the Genomics England 100,000 Genomes Project, providing a comprehensive, high-resolution map of copy number alterations, structural variation, and key global genomic features, including mutational signatures, intratumor heterogeneity, and analysis of extrachromosomal DNA formation.

    Techniques: Sampling, Variant Assay